How to download fasta file off benchling






















Once your files are selected, click on the "export" icon in the top right corner. From there you can either export your files as Multipart Genbank. To export your sequences in bulk, use the "Export Data" modal. To access this modal, click on your avatar located on the bottom-left corner of the navigation bar , and select "Data Export". Note : Certain enterprise tenants do not have the "Export Data" modal enabled due to company policy. In the "Export Data" modal, click on the "Sequences" export option.

In this pop-up, you can designate the locations from which you'd like to export your sequences and also whether or not you'd like to include archived sequences by reason in your export.

Finally, you're able to designate whether or not you'd like your files as individual Genbank. All Collections. Stack Overflow for Teams — Collaborate and share knowledge with a private group. Create a free Team What is Teams? Learn more. Ask Question. Asked 2 years ago. Active 1 year, 9 months ago. Viewed 9k times. Improve this question. Add a comment. Active Oldest Votes. Improve this answer. Matteo Ferla Matteo Ferla 3, 3 3 silver badges 16 16 bronze badges. Downloading a few sequences For this, you can use Entrez Direct as mentioned by dc BlueSky BlueSky 2 2 bronze badges.

Whether you want a large number of files or just one file is, I guess, a personal choice. A multifasta file is fairly standard though. I don't think you can create individual files for each sequence using epost and efetch ; you will have to either use a bash script or postprocess the efetch output using the unix tool split. Sign up or log in Sign up using Google. Sign up using Facebook. Sign up using Email and Password. Post as a guest Name. Email Required, but never shown.

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